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Function Index

This index contains lists of the C and Tcl function calls available. Entry items listed with a (T) suffix are callable from Tcl. Entry items listed with a (C) suffix are callable from within C.

a

  • add_cascade(T)
  • add_check(T)
  • add_command(T)
  • add_menu(T)
  • add_radio(T)
  • add_separator(T)
  • add_tags(T)
  • align: editor_widget
  • allocate(C)
  • ArrayWrite(C)
  • assemble_direct(T)
  • assemble_independent(T)
  • assemble_new_contigs(T)
  • assemble_one_contig(T)
  • assemble_screen(T)
  • assemble_shotgun(T)
  • assemble_single_strand(T)
  • auto_save: editor widget
  • autodisplay_traces: editor widget

    • b

  • BitmapWrite(C)
  • break_contig(T)

    • c

  • calc_quality(T)
  • capture(T)
  • check_assembly(T)
  • check_database(T)
  • checklist(T)
  • clear_cp(T)
  • clear_template(T)
  • clone_read(C)
  • clone_write(C)
  • close_db(C)
  • close_db(T)
  • closing databases
  • ColourBox(T)
  • compare_strands: editor widget
  • complement_contig(T)
  • Composition(T)
  • Composition2(T)
  • Composition_Init(C)
  • configure: editor_widget
  • contig_deregister(C)
  • contig_end: editor widget
  • contig_id(T)
  • contig_notify(C)
  • contig_order_to_number(T)
  • contig_read(C)
  • contig_register(C)
  • contig_register_init(C)
  • contig_register_join(C)
  • contig_start: editor widget
  • contig_write(C)
  • copy_db(T)
  • create_anno: editor widget
  • create_menus(T)
  • CreateAllContigList(T)
  • cursor_consensus: editor widget
  • cursor_down: editor widget
  • cursor_left: editor widget
  • cursor_right: editor widget
  • cursor_set: editor widget
  • cursor_up: editor widget

    • d

  • database, closing
  • database, deletion of
  • database, opening
  • DataWrite(C)
  • db_info(T)
  • deallocate(C)
  • del_db(C)
  • delete_anno: editor widget
  • delete_contig(T)
  • delete_key: editor widget
  • delete_left_key: editor widget
  • delete_trace: editor_widget
  • deleting databases
  • diff_trace: editor_widget
  • disassemble_readings(T)
  • double_strand(T)
  • dump_contig: editor_widget

    • e

  • edid_to_editor(T)
  • edit_anno: editor widget
  • edit_contig(T)
  • edit_key: editor widget
  • editor(C)
  • edits_made: editor_widget
  • end_message(C)
  • enter_tags(T)
  • entrybox(T)
  • error_bell(T)
  • expandpath(T)
  • extend_left: editor widget
  • extend_right: editor widget
  • extract_readings(T)

    • f

  • find_internal_joins(T)
  • find_long_gels(T)
  • find_oligo(T)
  • find_primers(T)
  • find_probes(T)
  • find_read: editor_widget
  • find_read_pairs(T)
  • find_repeats(T)
  • find_taq_terminator(T)
  • flush2t(C)
  • flush_contig_order(T)

    • g

  • gap_parse_args(C)
  • gel_read(C)
  • gel_write(C)
  • get_clone_info(C)
  • get_consensus(T)
  • get_contig_num(C)
  • get_displayed_annos: editor_widget
  • get_extents: editor_widget
  • get_gel_num(C)
  • get_hidden_reads: editor_widget
  • get_name: editor_widget
  • get_number: editor_widget
  • get_read_info(C)
  • get_read_names(T)
  • get_read_number: editor_widget
  • get_subclone_info(C)
  • get_tag_array(T)
  • get_vector_info(C)
  • GT_Write(C)
  • GT_Write_cached(C)

    • h

  • handle_io(C)
  • hide_read: editor_widget

    • i

  • invoke_trace: editor_widget
  • io: editor_widget
  • io_add_annotation(T)
  • io_add_clone(T)
  • io_add_contig(T)
  • io_add_reading(T)
  • io_add_template(T)
  • io_add_vector(T)
  • io_allocate(T)
  • io_clength(C)
  • io_clnbr(C)
  • io_crnbr(C)
  • io_dbsize(C)
  • io_deallocate_reading(C)
  • io_delete_base(C)
  • io_delete_contig(C)
  • io_flush(T)
  • io_get_extension(C)
  • io_handle(C)
  • io_init_annotations(C)
  • io_init_contig(C)
  • io_init_reading(C)
  • io_insert_base(C)
  • io_length(C)
  • io_lnbr(C)
  • io_mod_extension(C)
  • io_modify_base(C)
  • io_name(C)
  • io_rdonlu(C)
  • io_read_annotation(C)
  • io_read_annotations(T)
  • io_read_clone(T)
  • io_read_contig(T)
  • io_read_data(T)
  • io_read_database(T)
  • io_read_rd(C)
  • io_read_reading(T)
  • io_read_reading_name(T)
  • io_read_seq(C)
  • io_read_template(T)
  • io_read_text(T)
  • io_read_vector(T)
  • io_relpos(C)
  • io_rname(C)
  • io_rnbr(C)
  • io_wname(C)
  • io_write_annotation(C)
  • io_write_data(T)
  • io_write_rd(C)
  • io_write_reading_name(T)
  • io_write_seq(C)
  • io_write_text(T)

    • j

  • join: editor_widget
  • join_align: editor_widget
  • join_contig(T)
  • join_lock: editor widget
  • join_mode: editor_widget
  • join_percentage: editor_widget

    • k

  • keyldel(C)
  • keylget(C)
  • keylkeys(C)
  • keylset(C)

    • l

  • lget_contig_num(C)
  • lget_gel_num(C)
  • load_package(C), long version
  • load_package(C), short version
  • lorf_get_list(T)
  • lorf_in(T)
  • lorf_in_get(T)

    • m

  • max_gel_len(C)
  • menu_state_off(T)
  • menu_state_on(T)
  • menu_state_restore(T)
  • menu_state_save(T)
  • menu_state_set(T)
  • minimal_coverage(T)

    • n

  • Nannotations(C)
  • Nclones(C)
  • Ncontigs(C)
  • Nreadings(C)
  • Ntemplates(C)
  • NumContigs(C)
  • NumReadings(C)
  • Nvectors(C)

    • o

  • offsetof(C)
  • offsetofa(C)
  • okcancelhelp(T)
  • open_db(C)
  • open_db(T)
  • opening databases

    • p

  • parse_args(C)
  • pre_assemble(T)
  • PRIMER_TYPE(C)
  • PRIMER_TYPE_GUESS(C)

    • q

  • quit: editor_widget
  • quit_displays(T)

    • r

  • radiolist(T)
  • read_end2: editor widget
  • read_end: editor widget
  • read_start2: editor widget
  • read_start: editor widget
  • reg_get_ops(T)
  • reg_invoke_op(T)
  • reg_notify_highlight(T)
  • reg_notify_update(T)
  • register_id(C)
  • register_id(T)
  • remove_contig_duplicates(T)
  • repeater(T)
  • reset_contig_order(T)
  • result_data(C)
  • result_delete(T)
  • result_names(C)
  • result_names(T)
  • result_notify(C)
  • result_quit(T)
  • result_time(C)
  • result_time(T)
  • result_to_regs(C)

    • s

  • save: editor_widget
  • scalebox(T)
  • search anno: editor widget
  • search edit: editor widget
  • search name: editor widget
  • search position:
  • search problem: editor widget
  • search quality: editor widget
  • search sequence: editor widget
  • search tag: editor widget
  • search verifyand: editor widget
  • search verifyor: editor widget
  • select adjust: editor widget
  • select clear: editor widget
  • select from: editor widget
  • select to: editor widget
  • select_oligos accept: editor_widget
  • select_oligos generate: editor_widget
  • select_oligos next: editor_widget
  • select_oligos quit: editor_widget
  • select_oligos: editor widget
  • set_ccutoff: editor widget
  • set_confidence: editor widget
  • set_def(T)
  • set_defx(T)
  • set_displayed_annos: editor_widget
  • set_insert: editor widget
  • set_menu(T)
  • set_qcutoff: editor widget
  • set_reveal: editor widget
  • set_trace_lock: editor widget
  • SetContigGlobals(T)
  • shift_readings(T)
  • show_differences: editor widget
  • show_quality: editor widget
  • show_relationships(T)
  • shuffle_pads: editor_widget
  • start_message(C)
  • status add: editor_widget
  • status delete: editor_widget
  • status: editor widget
  • STRAND(C)
  • superedit: editor widget

    • t

  • tag_read(C)
  • tag_write(C)
  • Tcl_AppendResult(C)
  • tcl_composition(C)
  • Tcl_CreateCommand(C)
  • Tcl_DStringResult(C)
  • Tcl_ResetResult(C)
  • Tcl_SetResult(C)
  • TextWrite(C)
  • tkinit(T)
  • to_contigs_only(C)
  • tout_create_wins(T)
  • tout_init(T)
  • tout_pipe(T)
  • tout_set_redir(T)
  • tout_set_scroll(T)
  • trace_comparator: editor widget
  • trace_config: editor widget
  • translation_mode: editor_widget
  • transpose_left: editor widget
  • transpose_right: editor widget
  • type_contig_notify(C)
  • type_notify(C)
  • type_to_result(C)

    • u

  • unattached_readings(T)
  • undo: editor_widget

    • v

  • vector_read(C)
  • vector_write(C)
  • verror(C)
  • verror(T)
  • vfuncgroup(C)
  • vfuncgroup(T)
  • vfuncheader(C)
  • vfuncheader(T)
  • vfuncparams(C)
  • vmessage(C)
  • vmessage(T)
  • vTcl_DStringAppend(C)
  • vTcl_SetResult(C)
  • vw(C)

    • w

  • w(C)
  • write_mode: editor_widget
  • write_rname(C)

    • x

  • xview: editor_widget

    • y

  • yes_no(T)
  • yview: editor_widget

    • z

  • zap_left: editor widget
  • zap_right: editor widget

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    This page is maintained by staden-package. Last generated on 1 March 2001.
    URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/scripting_217.html