_
A
B
C
D
E
F
G
H
K
L
M
N
O
P
Q
R
S
T
U
V
W
_
_com
a
alu_only
assem_d_threshold
assem_e_rate
assem_number
assem_o_threshold
b
band_width
bit_size
c
CF
clip_mode
compression
conf_val
create
cutoff
d
database_name
database_version
def_5_pos
diag_score
difference_clip
e
email_address
email_args
email_progam
enabled
end
enter_all
f
file_error
file_id
file_type
g
generate_constraints
graph_d_limit
graph_e_limit
graph_o_threshold
h
hidden
k
keep_names
l
left_num_uncalled
left_win_length
library
m
mandatory
match_fraction
max_extent
max_length
max_pads
max_pmismatch
min_3_match
min_5_match
min_extent
min_length
min_match
minmatch
minscore
MODULE_PATH
MODULES
n
no_low_complexity
no_primate_rodent
num_diags
o
offset
other_args
p
probability
q
quality_clip
r
repeat_file
report
right_num_uncalled
right_win_length
s
SC
score
screen_file
screen_mode
SF
simple_only
SP
start
t
tag_type
tag_types
u
update_exp_file
update_expfile
use_sample_name
use_vp_file
v
vector_file
vector_list
vp_file
vp_length
w
window_length
word_length
WT
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staden-package.
Last generated on 22 October 2002.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap4_unix_96.html