This performs the gap4 directed assembly function. It takes a list of
Experiment File filenames and processes these according to their content. The
Experiment Files should contain AP lines to govern their positions in the
The function returns a list of failed files separated by newlines.
The database IO handle returned from a previous
A Tcl list of Experiment File filenames.
Whether to display alignments when assembling sequences containing a
tolerance of zero or more. A mode of non-zero displays alignments, 0 does
not. This is an optional argument with the default as 0.
When aligning sequences (tolerance >= 0) the aligned sequences must match the
consensus sequence with <= percentage mismatch. A percentage of -1
implies no check should be made. The default for this option is -1.
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Last generated on 1 March 2001.