get_tag_array

get_tag_array

This function parses the tag databases and returns a Tcl list containing the tag information. Each element of the returned list consist of the tag name, its type, and the default comment.

For instance, the standard installation returns a list starting with "{comment COMM ?} {oligo OLIG {}} {compression COMP {}} {stop STOP {}}".

Main Commands

• assemble_direct
• assemble... commands
• break_contig
• calc_quality
• check_assembly
• check_database
• complement_contig
• delete_contig
• disassemble_readings
• double_strand
• edit_contig
• enter_tags
• extract_readings
• find_long_gels
• find_oligo
• find_primers
• find_probes
• find_read_pairs
• find_repeats
• find_taq_terminator
• find_internal_joins
• get_consensus
• join_contig
• minimal_coverage
• pre_assemble
• shift_readings
• show_relationships
• unattached_readings