The editor has a variety of boolean values for determining editing and display
modes. Most take an optional value parameter to explicitly set the value
of the boolean. With no value parameter specified the boolean is toggled
This sets the editor 'cutoffs' mode. A setting of 1
indicates that cutoff data is to be displayed in the
lightColour colour. A setting of 0 indicates that no cutoff
data is to be displayed.
This command sets the editor insert/replace mode. A value of 1
sets the editor to insert mode. A value of 0 sets the editor to
This command sets which editing actions should be allowed. The
modes argument should be a Tcl list of 10 values, each 0
(disabled) or 1 (enabled). The values in order repesent insert any to
read, delete any from read, insert to consensus, delete dash from
consensus, delete any from consensus, replace base in consensus, shift
readings, transpose any bases, can use uppercase edits, and
replacement mode. The replacement mode is 0 for editing by base type
and 1 for edit by confidence value.
This command sets the auto-save mode. A value of 1 enables
auto-saving. A value of 0 disables it.
This command set the show differences mode. A value of 1 will
display only those bases that disagree with the consensus. All
other bases are displayed as a fullstop. A value of 0 shows all
This command sets the compare strands mode. A value of 1 will make
the editor compute the consensus separately for the positive and
negative strands. Strands that disagree are given a final consensus
character of '-'. A value of 0 will use the normal single
This command sets the scroll locking between two editors forming a
join editor. A value of 1 will mean that scrolling (not cursor
movement) in one contig will also scroll the other contig.
This commands sets the quality display mode. With a value of 1 and
a positive quality cutoff value all qualities values are displayed as
grey scales using the 10
qualColourn configuration options.
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Last generated on 1 March 2001.