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merge_contig_tags

#include <tagUtils.h>

void merge_contig_tags(
        GapIO  *io,
        int     contig1,
        int     contig2,
        int     off);

This function is used to join a tag list from one contig to a tag list from another contig. All the tags in contig number contig1 are added to contig number contig2. Each tag is moved by off bases when it is copied. The tag list is correctly maintained as sorted list. At the end of the function, the tags list for contig number contig2 is set to 0.

The main purpose of this function is for use when joining contigs.

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URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/scripting_158.html