Gap4 Shotgun Assembly

Description

This module assembles the processed sequences into gap4 using gap4's own assembly engine. Note that this is incompatible with use of "Enter assembly into Gap4", which should only be used for external (to gap4) assembly engines.

Option: Gap4 database name

Option: Gap4 database version

The name and version of the database to assemble into.

Option: Create new database

This is a toggle to define whether the specified gap4 database should be created or appended to. Be warned that at present creating a new database will overwrite existing one of the same name, in the same directory, without any warnings.

Option: Minimum exact match

Option: Maximum number of pads

Option: Maximum percentage mismatch

These control the main assembly parameters within gap4. For more details seesection Normal shotgun assembly.