Cloning Vector Clip

Description

This module searches for non "sequencing" vectors used in the shotgunning process, eg for Cosmid or YAC. Any fragment in any orientation of this vector could be present so there is no need for the cut sites to be known. The vector_clip program is used for this task (see section Screening against Vector Sequences).

Option: Vector file name

The filename containing the vector sequence. At present this should be a file containing a single plain text sequence containing just the bases or white space.

Option: Max probability

For each match its probability of occurring by chance is calculated. Any match with a probability lower than `Max probability' is accepted.