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Vector_primer File

The vector_primer files store the data for each vector/primer pair combination as a single record (line) and up to 100 records can be contained in a file. The items on each line must be separated by spaces or tabs (only the file name can contain spaces) and a newline character ends the record.

The items in a record are:

name seq_r seq_f file_name

name is an arbitrary record name. seq_r is the sequence between the reverse primer and the cloning site. seq_f is the sequence between the forward primer and the cloning site. file_name is the name of the file containing the complete vector sequence.

An example file containing two entries (for m13mp18, and a vector called f1) is shown below. "\" symbols have been used to denote wrapped lines and so it can be seen that the first record is shown on two lines and the next on 1.


m13mp18 attacgaattcgagctcggtaccc ggggatcctctagagtcgacctgcaggcatgcaagcttggc \
/pubseq/tables/vectors/m13mp18.seq
f1 CCGGGAATTCGCGGCCGCGTCGACT CTAGACTCGAGTTATGCATGCA  af_clones_vec

See @xref{Vector_Clip-Vector_Primer-Files,Vector_Clip-Vector_Primer-Files,Vector_Primer files} for information about creating new vector_primer file entries.


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This page is maintained by staden-package. Last generated on 22 October 2002.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/formats_unix_24.html