Staden Package
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A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
SourceForge project home
Summary
Who's who
Io_lib (aka libstaden-read.so on Debian systems) migrated to github
Staden Package 2.0.0b11-2016 released
Io_lib 1.13.4 released
Io_lib 1.13.0 released.
Staden Package Windows Installer released
Mac OS X binaries released.
Staden Package 2.0.0b9 released
Staden Package 2.0.0b8 released
staden-io_lib 1.12.5 released
Staden 2.0.0b7 release
Recent Releases
Documentation
25 Apr 2016
staden-2.0.0b11-2016-linux-x86_64.tar.xz
25 Apr 2016
staden-2.0.0b11-2016-linux-x86_64.tar.gz
25 Apr 2016
staden-2.0.0b11-2016-windows-x86_64.exe
25 Apr 2016
staden-2.0.0b11-2016-windows-i386.exe
25 Apr 2016
staden-2.0.0b11-2016-MacOSX.dmg
25 Apr 2016
staden-2.0.0b11-2016-src.tar.gz
25 Apr 2016
README
25 Apr 2016
README
25 Apr 2016
io_lib-1.14.8.tar.gz
25 Apr 2016
staden_doc-2.0.0b11-src.tar.gz
Release notes
Mini manual
User manual
Mutation detection methods
Phrap and Gap4 integration
References and papers
Programming manual
Definition of a contig
Scramble / CRAM benchmarks