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Gap4 Shotgun Assembly

This module assembles the processed sequences into gap4 using gap4's own assembly engine. Note that this is incompatible with use of "Enter assembly into Gap4", which should only be used for external (to gap4) assembly engines.

Option: Gap4 database name
Option: Gap4 database version
The name and version of the database to assemble into.

Option: Create new database
This is a toggle to define whether the specified gap4 database should be created or appended to. Be warned that at present creating a new database will overwrite existing one of the same name, in the same directory, without any warnings.

Option: Minimum exact match
Option: Maximum number of pads
Option: Maximum percentage mismatch
These control the main assembly parameters within gap4. For more details seesection Normal shotgun assembly.

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This page is maintained by staden-package. Last generated on 22 October 2002.