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Cloning Vector Clip

This module searches for non "sequencing" vectors used in the shotgunning process, eg for Cosmid or YAC. Any fragment in any orientation of this vector could be present so there is no need for the cut sites to be known. The vector_clip program is used for this task (see section Screening against Vector Sequences).

Option: Vector file name
The filename containing the vector sequence. At present this should be a file containing a single plain text sequence containing just the bases or white space.

Option: Max probability
For each match its probability of occurring by chance is calculated. Any match with a probability lower than `Max probability' is accepted.

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