This module searches for non "sequencing" vectors used in the shotgunning
process, eg for Cosmid or YAC. Any fragment in any orientation of this vector
could be present so there is no need for the cut sites to be known. The
vector_clip program is used for this task
(see section Screening against Vector Sequences).
- Option: Vector file name
The filename containing the vector sequence. At present this should be a file
containing a single plain text sequence containing just the bases or white
- Option: Max probability
For each match its probability of occurring by chance is calculated. Any match
with a probability lower than `Max probability' is accepted.
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Last generated on 22 October 2002.