first previous next last contents

Using The Template Display With Mutation Data

[picture]
(Click for full size image)

Figure 7. The template display showing the whole of the BRCA1 gene (exons in green).

The view obtained from the Template display and shown in Figure 7 is not of practical use but serves here to illustrate the overall arrangement of the data for our chosen example the BRCA1 gene. This figure shows the entirety of the EMBL entry HSLBRCA1 with its exons marked in green. Only exon 11 has patient trace data stacked above it.

[picture]
(Click for full size image)

Figure 8. A zoomed-in version of the data shown in Figure 7.

Here we can see all the readings covering exon 11. Forward readings are light blue, reverse readings orange, primers are marked in yellow, mutations in red and orange. A common mutation appears in the leftmost set of readings and illustrates the value of using the template display for visualising the overall pattern of the tagged mutations.


first previous next last contents
This page is maintained by staden-package. Last generated on 22 October 2002.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/mutations_unix_6.html