extract_seq -- extracts sequence from a trace or experiment file.
-output output_name] [input_name]
extract_seq extracts the sequence information from binary trace
files, Experiment files, or from the old Staden format plain files. The input
can be read either from files or from standard input, and the output can be
written to either a file or standard output. Multiple input files can be
specified. The output contains the sequences split onto lines of at most 60
LTline types) trace file. Without this option, or when the trace file cannot be found, the sequence output is that listed in the Experiment File. This option has no effect for other input format types.
extract_seqwill automatically determine the correct input file type. This option is supplied incase the automatic determination is incorrect (which is possible, but has never been observed).
-good_onlyargument is specified this controls whether the cosmid sequence should be considered good data. Without this argument cosmid sequence is considered good.
See section ExperimentFile(4).See section scf(4).