The plot displays the results for each restriction enzyme on a separate line. Enzymes with no sites are also shown. The order of these lines may be changed by pressing and dragging the middle mouse button or alt + left mouse button on one of the displayed names at the left side of the screen.
The results are plotted as black lines but users can select colours for each enzyme type by pressing the right button on any of its matches. A menu containing Information and Configure will pop up. Configure will display a colour selection dialogue. Adjusting the colour here will adjust the colour for all matches for this restriction enzyme.